PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G026600.1
Common NameB456_009G026600, LOC105770611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 333aa    MW: 35933.8 Da    PI: 7.4783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G026600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000192222601255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.009G026600.1 222 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 260
                         6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.496210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-10220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-5220264No hitNo description
Gene3DG3DSA:4.10.280.101.4E-7224266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNRGVLQSSP VQQLMAGNPN WWNINTMRPP THHHQQAAAV AAAPSPFLHP PPTTFFSHTP  60
TSSSSSSSSS SLPVPSWHDN NQELPESWSQ LLLGGLVGEE EKGGDIGQFQ ALHQVSNANS  120
VVDVKQENSA SSYVYGHASE DFHHHQANKP AWFHQISSAA SSPKSSVTSF SSNMLDFSGN  180
KAEHGRQPQP DRSSECNSTA TGGPLKKPRV QPSATQSTLK VRKEKLGDRI TSLHQLVSPF  240
GKTDTASVLS EAIGYIRFLQ SQIEALSLPY LGSGSANMRH QQQSDCKEEA KKDLRSRGLC  300
LVPVSCTLEV WSGDNGADYW APPPALGAGF FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5279180.0HQ527918.1 Gossypium herbaceum clone NBRI_B2_1719 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447341.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D12e-72BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2TC890.0A0A0D2TC89_G
STRINGVIT_11s0016g03560.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.19e-62bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]